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Hire Nejc S.

Netherlands

Microbiome researcher | Genomics | Bioinformatics | Data analytics & visualization

Profile Summary

Coming soon

Subject Matter Expertise

• ★ Genetics
• ★ Data Analysis
• ★ Bioinformatics
• ☆ Natural Product Chemistry
• ☆ Microbiome Research
• ☆ Metabolomics
• ☆ Next Generation Sequencing (NGS)
• ☆ Microbial Ecology
• ☆ Agroecology

Services

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, Newswriting

Research Market Research, User Research, Fact Checking, Gap Analysis, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics, Data Processing

Product Development Formulation

Work Experience

NIOO-KNAW

January 2021 - Present

Postdoctoral Scholar

Michigan State University

April 2017 - December 2020

Postdoc

University of Washington

November 2014 - March 2017

Research assistent

University of Ljubljana

2009 - 2010

Education

Ph.D. (Institute of plant biology)

University of Zurich

2010 - 2014

Diploma thesis (Biotechnical faculty)

University of Ljubljana

2004 - 2009

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

Nejc Stopnisek, Muhammad Syamsu Rizaludin, Jos M. Raaijmakers, Paolina Garbeva(2021). The Chemistry of Stress: Understanding the ‘Cry for Help’ of Plant Roots . Metabolites. 11. (6). p. 357. {MDPI} {AG}

Nejc Stopnisek, Ashley Shade (2021). Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype . The ISME Journal.

Nejc Stopnisek, Serdar Turkarslan, Anne W. Thompson, Christina E. Arens, Jacob J. Valenzuela, James Wilson, Kristopher A. Hunt, Jessica Hardwicke, Adrián López García de Lomana, Sujung Lim, et al. (2021). Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions . The ISME Journal.

Nejc Stopnisek, Keara L. Grady, Jackson W. Sorensen, John Guittar, Ashley Shade(2019). Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops . Nature Communications. 10. (1). Springer Science and Business Media {LLC}

(2019). Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops . Nature Communications.

(2019). Abundance-occupancy distributions to prioritize plant core microbiome membership . Current Opinion in Microbiology.

(2019). Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities .

Bell, T.H., Hockett, K.L., Alcalá-Briseño, R.I., Barbercheck, M., Beattie, G.A., Bruns, M.A., Carlson, J.E., Chung, T., Collins, A., Emmett, B., et al.(2019). Manipulating wild and tamed phytobiomes: Challenges and opportunities . Phytobiomes Journal. 3. (1). p. 3-21.

Shade, A., Stopnisek, N.(2019). Abundance-occupancy distributions to prioritize plant core microbiome membership . Current Opinion in Microbiology. 49. p. 50-58.

Grady, K.L., Sorensen, J.W., Stopnisek, N., Guittar, J., Shade, A.(2019). Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops . Nature Communications. 10. (1).

Nejc Stopnisek, Kelley A. Meinhardt, Manmeet W. Pannu, Stuart E. Strand, Steven C. Fransen, Karen L. Casciotti, David A. Stahl(2018). Ammonia-oxidizing bacteria are the primary N2O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil . Environmental Microbiology. Wiley

Meinhardt, K.A., Stopnisek, N., Pannu, M.W., Strand, S.E., Fransen, S.C., Casciotti, K.L., Stahl, D.A.(2018). Ammonia-oxidizing bacteria are the primary N<inf>2</inf>O producers in an ammonia-oxidizing archaea dominated alkaline agricultural soil . Environmental Microbiology. 20. (6). p. 2195-2206.

Stopnisek, N., Zuhlke, D., Carlier, A., Barberan, A., Fierer, N., Becher, D., Riedel, K., Eberl, L., Weisskopf, L.(2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi . ISME Journal. 10. (1). p. 253-264.

Nejc Stopnisek, Daniela Z&#252;hlke, Aur&#233;lien Carlier, Albert Barber&#225;n, Noah Fierer, D&#246;rte Becher, Katharina Riedel, Leo Eberl, Laure Weisskopf(2015). Molecular mechanisms underlying the close association between soil Burkholderia and fungi . ISME J. 10. (1). p. 253--264. Nature Publishing Group

Nejc Stopnisek, Thomas Kost, Kirsty Agnoli, Leo Eberl, Laure Weisskopf(2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans . Front. Microbiol. 4. Frontiers Media {SA}

Stopnisek, N., Bodenhausen, N., Frey, B., Fierer, N., Eberl, L., Weisskopf, L.(2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations . Environmental microbiology. 16. (6). p. 1503-1512.

Nejc Stopnisek, Natacha Bodenhausen, Beat Frey, Noah Fierer, Leo Eberl, Laure Weisskopf(2013). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations . Environ Microbiol. 16. (6). p. 1503--1512. Wiley-Blackwell

Kost, T., Stopnisek, N., Agnoli, K., Eberl, L., Weisskopf, L.(2013). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans . Frontiers in Microbiology. 4. (JAN).

N. Stopnisek, C. Gubry-Rangin, S. Hofferle, G. W. Nicol, I. Mandic-Mulec, J. I. Prosser(2010). Thaumarchaeal Ammonia Oxidation in an Acidic Forest Peat Soil Is Not Influenced by Ammonium Amendment . Applied and Environmental Microbiology. 76. (22). p. 7626--7634. American Society for Microbiology

Stopnišek, N., Gubry-Rangin, C., H&#246;fferle, S., Nicol, G.W., Mandič-Mulec, I., Prosser, J.I.(2010). Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment . Applied and Environmental Microbiology. 76. (22). p. 7626-7634.

OTHER

AF Bintarti, A Sulesky-Grieb, N Stopnisek, A Shade(2021). Endophytic microbiome variation at the level of a single plant seed . Cold Spring Harbor Laboratory

Nejc Stopnisek, Adina Howe, Shane K. Dooley, Fan M. Yang, Keara L. Grady, Ashley Shade(2021). Genome-centric analyses of seasonal phyllosphere microbiome activities in perennial crops . Cold Spring Harbor Laboratory

Nejc Stopnisek, Ashley Shade(2019). Prioritizing persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype . Cold Spring Harbor Laboratory