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Hire Dr. Leandro N.

Brazil

USD 55 /hr

Bioinformatician/Data Scientist | Expert in R, Multi-omics, Statistics & Metagenomics

Profile Summary

PhD in Bioinformatics. Currently, I am a Postdoctoral Researcher at the National Laboratory of Scientific Computing (LNCC), Brazil. My work focuses on the integration of meta’omics data for bridging microbial ecology, microbial processes, and ecosystem functioning. I have experience in the use of the Unix/Shell and programming languages, as such R (Proficiency) and Python (Intermediate). I also have experience with state-of-art software (e.g., Megahit, Metabat2, Maxbin2, Anvi’o, etc).

Subject Matter Expertise

• ★ Comparative Genomics
• ★ Data Science
• ★ Bioinformatics

Services

• Research
• Consulting
• Data & AI

Research Feasibility Study, Fact Checking, Gray Literature Search, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization

Work Experience

Postdoctoral researcher

Laboratório Nacional de Computação Científica

March 2020 - Present

Bioinformatist

University of Vienna (Austria)

April 2018 - February 2020

BIoinformatician

University of Sao Paulo

March 2013 - September 2019

Education

PhD

University of Sao Paulo

October 2015 - September 2019

Certifications

• Virus Research and Surveillance: Bioinformatics, Genetics and Public Health

  Federal University of Rio de Janeiro

  November 2020 - December 2020

• Tree building: Advanced concepts and practice of phylogenetic analysis

  European Molecular Biology Organization, EMBO/EMBL

  September 2018 - September 2018

Publications

JOURNAL ARTICLE

Leandro Nascimento Lemos and Alexandre Pedrinho and Ana Tereza Ribeiro de Vasconcelos and Siu Mui Tsai and Lucas William Mendes(2021). Amazon deforestation enriches antibiotic resistance genes . Soil Biology and Biochemistry. 153. p. 108110. Elsevier {BV}

Leandro Nascimento Lemos and Alexandre Pedrinho and Ana Tereza Ribeiro de Vasconcelos and Siu Mui Tsai and Lucas William Mendes(2021). Amazon deforestation enriches antibiotic resistance genes . Soil Biology and Biochemistry. 153. p. 108110. Elsevier {BV}

Leandro Lemos and Lokeshwaran Manoharan and Lucas Mendes and Andressa Venturini and Victor Pylro and Siu Mui Tsai(2020). Metagenome assembled‐genomes reveal similar functional profiles of CPR /Patescibacteria phyla in soils . Environmental Microbiology Reports. 12. (6). p. 651--655. Wiley

(2020). Tannin supplementation modulates the composition and function of ruminal microbiome in lambs infected with gastrointestinal nematodes . FEMS Microbiology Ecology.

(2019). Dynamics of archaeal community in soil with application of composted tannery sludge . Scientific Reports.

(2019). Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia ( CPR /Patescibacteria phylum) suggest a symbiotic lifestyle . Molecular Ecology.

(2019). Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland . Microbial ecology.

(2018). Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado . Communications biology.

Abdalla Filho, A.L., Corrêa, P.S., Lemos, L.N., Dineshkumar, D., Issakowicz, J., Ieda, E.H., Lima, P.M.T., Barreal, M., McManus, C., Mui, T.S., et al.(2017). Diets based on plants from Brazilian Caatinga altering ruminal parameters, microbial community and meat fatty acids of Santa Inês lambs . Small Ruminant Research. 154. p. 70-77.

Lemos, L.N., Pereira, R.V., Quaggio, R.B., Martins, L.F., Moura, L.M.S., da Silva, A.R., Antunes, L.P., da Silva, A.M., Setubal, J.C.(2017). Genome-centric analysis of a thermophilic and cellulolytic bacterial consortium derived from composting . Frontiers in Microbiology. 8. (APR).

Navarrete, A.A., Mellis, E.V., Escalas, A., Lemos, L.N., Junior, J.L., Quaggio, J.A., Zhou, J., Tsai, S.M.(2017). Zinc concentration affects the functional groups of microbial communities in sugarcane-cultivated soil . Agriculture, Ecosystems and Environment. 236. p. 187-197.

Pylro, V.S., Morais, D.K., de Oliveira, F.S., dos Santos, F.G., Lemos, L.N., Oliveira, G., Roesch, L.F.W.(2016). BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies . Microbial Ecology. 72. (2). p. 443-447.

Lemos, Leandro Nascimento and de Souza, Rosineide Cardoso and de Souza Cannavan, Fabiana and Patricio, Andr{\'e} and Pylro, Victor Satler and Hanada, Rog{\'e}rio Eiji and Mui, Tsai Siu(2016). Metagenome sequencing of the microbial community of two Brazilian anthropogenic Amazon dark earth sites, Brazil. Genomics data. 10. p. 167--168. Elsevier

Antunes, L.P., Martins, L.F., Pereira, R.V., Thomas, A.M., Barbosa, D., Lemos, L.N., Silva, G.M.M., Moura, L.M.S., Epamino, G.W.C., Digiampietri, L.A., et al.(2016). Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics . Scientific Reports. 6.

Pylro, Victor S., Morais, Daniel K., de Oliveira, Francislon S., dos Santos, Fausto G., Lemos, Leandro N., Oliveira, Guilherme, Roesch, Luiz F. W.(2016). BMPOS: a Flexible and User-Friendly Tool Sets for Microbiome Studies . Microbial Ecology. 72. (2). p. 443-447.

Morassutti, A.L., Perelygin, A., DE Carvalho, M.O., Lemos, L.N., Pinto, P.M., Frace, M., Wilkins, P.P., Graeff-Teixeira, C., DA Silva, A.J.(2013). High throughput sequencing of the Angiostrongylus cantonensis genome: a parasite spreading worldwide . Parasitology. 140. (10). p. 1304-1309.

Morassutti, Alessandra L., Perelygin, Andrey, De Carvalho, Marcos O., Lemos, Leandro Nascimento, Pinto, Paulo Marcos, Frace, Mike, Wilkins, Patricia P., Graeff-Teixeira, Carlos, Da Silva, Alexandre J.(2013). High throughput sequencing of the Angiostrongylus cantonensis genome: a parasite spreading worldwide . Parasitology. 140. (10). p. 1304-1309.

Lemos, Leandro N., Fulthorpe, Roberta R., Roesch, Luiz F. W.(2012). Low sequencing efforts bias analyses of shared taxa in microbial communities . Folia Microbiologica. 57. (5). p. 409-413.

Lemos, L.N., Fulthorpe, R.R., Roesch, L.F.W.(2012). Low sequencing efforts bias analyses of shared taxa in microbial communities . Folia Microbiologica. 57. (5). p. 409-413.

Roesch, Luiz F. W., Fulthorpe, Roberta R., Pereira, Antonio B., Pereira, Clarissa K., Lemos, Leandro N., Barbosa, Anthony D., Suleiman, Afnan K. A., Gerber, Alexandra L., Pereira, Marcos G., Loss, Arcangelo, et al.(2012). Soil bacterial community abundance and diversity in ice-free areas of Keller Peninsula, Antarctica . Applied Soil Ecology. 61. p. 7-15.

Roesch, L.F.W., Fulthorpe, R.R., Pereira, A.B., Pereira, C.K., Lemos, L.N., Barbosa, A.D., Suleiman, A.K.A., Gerber, A.L., Pereira, M.G., Loss, A., et al.(2012). Soil bacterial community abundance and diversity in ice-free areas of Keller Peninsula, Antarctica . Applied Soil Ecology. 61. p. 7-15.

Lemos, L.N., Fulthorpe, R.R., Triplett, E.W., Roesch, L.F.W.(2011). Rethinking microbial diversity analysis in the high throughput sequencing era . Journal of Microbiological Methods. 86. (1). p. 42-51.

Lemos, Leandro N., Fulthorpe, Roberta R., Triplett, Eric W., Roesch, Luiz F. W.(2011). Rethinking microbial diversity analysis in the high throughput sequencing era . Journal of Microbiological Methods. 86. (1). p. 42-51.

Leandro Nascimento Lemos, Afnan Khalil Ahmad Suleiman, Antônio Batista Pereira, Luiz Fernando Wurdig Roesch(2010). Global patterns in soil bacterial community composition across a continental scale . INCT-APA Annual Activity Report. p. 63--67. Editora Cubo Multimidia

OTHER

Leandro Nascimento Lemos, Daniel Kumazawa Morais, Siu Mui Tsai, Luiz Roesch, Victor Pylro(2017). Bioinformatics for Microbiome Research: Concepts, Strategies, and Advances . The Brazilian Microbiome. p. 111--123. Springer International Publishing