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Hire Dr. Animesh Acharjee
United Kingdom
USD 50 /hr
Freelance Data Scientist I Biomarker Discovery and Statistical Bioinformatics | Expert in R
Profile Summary
Subject Matter Expertise
Services
Literature search
Deep dive into topic,
Gap Analysis,
Science-based recommendations
Data Science
Data visualization,
Analytical report,
Analysis from dataset,
Machine learning,
Quantitative analysis
Statistical review
Verify statistical analysis,
Conduct simple analysis,
Conduct complex analyses
Writing
Journal article,
Scientific report,
Grant proposal,
Conference poster
Secondary Research
Literature search
Clinical Research Consulting
Perform statistical analysis
Work Experience
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University of Birmingham
September 2017 - Present
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Investigator Scientist
University of Cambridge
February 2014 - January 2017
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Systems Biologist
BASF - Crop Design, Gent, Belgium
February 2012 - February 2014
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Biostatistician
Synergie Lyon Cancer, Lyon, France
June 2011 - February 2012
Education
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PhD
Wageningen University
July 2007 - June 2011
Publications
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JOURNAL ARTICLE
- Animesh Acharjee, Zsuzsanna Ament, Matthew B. Bevers, Zoe Wolcott, W. Taylor Kimberly(2021). Uric Acid and Gluconic Acid as Predictors of Hyperglycemia and Cytotoxic Injury after Stroke . Translational Stroke Research. Springer Science and Business Media {LLC}
- (2021). Unique diagnostic signatures of concussion in the saliva of male athletes: the Study of Concussion in Rugby Union through MicroRNAs (SCRUM) . British journal of sports medicine.
- (2021). Suppression of insulin-induced gene 1 (INSIG1) function promotes hepatic lipid remodelling and restrains NASH progression . Molecular metabolism.
- Animesh Acharjee, Hassan Sadozai, Thomas Gruber, Beat Gloor, Eva Karamitopoulou(2021). Pancreatic Cancers with High Grade Tumor Budding Exhibit Hallmarks of Diminished Anti-Tumor Immunity . Cancers. 13. (5). p. 1090. {MDPI} {AG}
- Animesh Acharjee, Hassan Sadozai, Thomas Gruber, Beat Gloor, Eva Karamitopoulou (2021). Pancreatic Cancers with High Grade Tumor Budding Exhibit Hallmarks of Diminished Anti-Tumor Immunity . Cancers.
- Sadozai H, Acharjee A, Gruber T, Gloor B, Karamitopoulou E, Lin H(2021). Pancreatic Cancers with High Grade Tumor Budding Exhibit Hallmarks of Diminished Anti-Tumor Immunity . Cancers.
- (2021). Distinct Stromal and Immune Features Collectively Contribute to Long-Term Survival in Pancreatic Cancer . Frontiers in immunology.
- Animesh Acharjee, Hannah Wood, Hayden Pearce, Mohammed Nabil Quraishi, Richard Powell, Amanda Rossiter, Andrew Beggs, Andrew Ewer, Paul Moss, Gergely Toldi(2021). Breastfeeding promotes early neonatal regulatory T‐cell expansion and immune tolerance of non‐inherited maternal antigens . Allergy. Wiley
- Traumatic injury is associated with reduced deoxyribonuclease activity and dysregulation of the actin scavenging system @article{2021, doi = {10.1093/burnst/tkab001}, url = {https://doi.org/10.1093%2Fburnst%2Ftkab001}, year = 2021, publisher = {Oxford University Press ({OUP})}, title = {{OUP} accepted manuscript}, journal = {Burns and Trauma} } . Burns & Trauma.
- Koch M, Acharjee A, Ament Z, Schleicher R, Bevers M, Stapleton C, Patel A, Kimberly WT(2021). Machine Learning-Driven Metabolomic Evaluation of Cerebrospinal Fluid: Insights Into Poor Outcomes After Aneurysmal Subarachnoid Hemorrhage . Neurosurgery.
- Animesh Acharjee, Joseph Larkman, Yuanwei Xu, Victor Roth Cardoso, Georgios V. Gkoutos(2020). A random forest based biomarker discovery and power analysis framework for diagnostics research . BMC Medical Genomics. 13. (1). Springer Science and Business Media {LLC}
- Animesh Acharjee, Furqan Aziz, John A. Williams, Dominic Russ, Laura Bravo-Merodio, Georgios V. Gkoutos(2020). Biomarker Prioritisation and Power Estimation Using Ensemble Gene Regulatory Network Inference . International Journal of Molecular Sciences. 21. (21). p. 7886. {MDPI} {AG}
- Animesh Acharjee, Furqan Aziz, John Williams, Dominic Russ, Laura Bravo-Merodio, Georgios V. Gkoutos (2020). Biomarker Prioritisation and Power Estimation Using Ensemble Gene Regulatory Network Inference . International Journal of Molecular Sciences.
- Liu KD, Acharjee A, Hinz C, Liggi S, Murgia A, Denes J, Gulston MK, Wang X, Chu Y, West JA, et al.(2020). Consequences of Lipid Remodeling of Adipocyte Membranes Being Functionally Distinct from Lipid Storage in Obesity . Journal of proteome research.
- (2020). The Consequences of Lipid Remodelling of Adipocyte Membranes Being Functionally Distinct From Lipid Storage in Obesity. Journal of Proteome Research.
- (2020). Machine learning for high-throughput field phenotyping and image processing provides insight into the association of above and below-ground traits in cassava (Manihot esculenta Crantz) . Plant methods.
- Animesh Acharjee, Veronica Lolli, Donato Angelino, Michele Tassotti, Daniele Del Rio, Pedro Mena, Augusta Caligiani (2020). Chemical Characterization of Capsule-Brewed Espresso Coffee Aroma from the Most Widespread Italian Brands by HS-SPME/GC-MS . Molecules.
- Animesh Acharjee, Veronica Lolli, Donato Angelino, Michele Tassotti, Daniele Del Rio, Pedro Mena, Augusta Caligiani (2020). Chemical Characterization of Capsule-Brewed Espresso Coffee Aroma from the Most Widespread Italian Brands by HS-SPME/GC-MS . Molecules.
- Quraishi MN, Acharjee A, Beggs AD, Horniblow R, Tselepis C, Gkoutus G, Ghosh S, Rossiter A, Loman N, van Schaik W, et al.(2020). A pilot integrative analysis of colonic gene expression, gut microbiota and immune infiltration in primary sclerosing cholangitis-inflammatory bowel disease: association of disease with bile acid pathways . Journal of Crohn's & colitis.
- (2020). OP09 Immunomodulatory mechanisms of faecal microbiota transplantation are associated with clinical response in ulcerative colitis: early results from STOP-Colitis . Journal of Crohn's and Colitis.
- (2020). P005 Regulators of the guanylate cyclase pathway are potential novel markers of mucosal healing in IBD . Journal of Crohn's and Colitis.
- (2020). P297 Novel serum soluble markers of histological healing in ulcerative colitis . Journal of Crohn's and Colitis.
- Animesh Acharjee, Laura Bravo-Merodio, John A. Williams, Georgios V. Gkoutos(2019). -Omics biomarker identification pipeline for translational medicine . Journal of Translational Medicine. 17. (1). Springer Science and Business Media {LLC}
- Animesh Acharjee, Laura Bravo-Merodio, Jon Hazeldine, Conor Bentley, Mark Foster, Georgios V. Gkoutos, Janet M. Lord(2019). Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction . Scientific Data. 6. (1). Springer Science and Business Media {LLC}
- Stapleton CJ, Acharjee A, Irvine HJ, Wolcott ZC, Patel AB, Kimberly WT(2019). High-throughput metabolite profiling: identification of plasma taurine as a potential biomarker of functional outcome after aneurysmal subarachnoid hemorrhage . Journal of neurosurgery.
- (2019). 125 - Altered DNA Methylation and Serum Levels of Metabolites is Associated With Type 2 Diabetes in Adolescents . Canadian Journal of Diabetes.
- Animesh Acharjee, Pedro Mena, Iziar A. Ludwig, Virginia B. Tomatis, Luca Calani, Alice Rosi, Furio Brighenti, Sumantra Ray, Julian L. Griffin, Les J. Bluck, et al.(2019). Inter-individual variability in the production of flavan-3-ol colonic metabolites: preliminary elucidation of urinary metabotypes . European Journal of Nutrition. 58. (4). p. 1529--1543. Springer Science and Business Media {LLC}
- Animesh Acharjee, Hannah J Irvine, Zoe Wolcott, Zsuzsanna Ament, Holly Hinson, Bradley J Molyneaux, J Marc Simard, Kevin N Sheth, W Taylor Kimberly(2019). Abstract TMP18: Intravenous Glibenclamide Reduces Hypoxanthine, a Novel Predictor of Brain Edema Formation: An Exploratory Analysis of GAMES-RP . Stroke. 50. (Suppl{\_}1). Ovid Technologies (Wolters Kluwer Health)
- Animesh Acharjee, Jonathan P. Segal, Benjamin H. Mullish, Mohammed Nabil Quraishi, Horace R. T. Williams, Tariq Iqbal, Ailsa L. Hart, Julian R. Marchesi(2019). The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease . Therapeutic Advances in Gastroenterology. 12. p. 175628481882225. {SAGE} Publications
- Animesh Acharjee, Francis W. B. Sanders, Celia Walker, Luke Marney, Lee D. Roberts, Fumiaki Imamura, Benjamin Jenkins, Jack Case, Sumantra Ray, Samuel Virtue, et al.(2018). Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption . Genome Biology. 19. (1). Springer Nature
- Animesh Acharjee, Steven A. Murfitt, Paola Zaccone, Xinzhu Wang, Yvonne Sawyer, Albert Koulman, Lee D. Roberts, Anne Cooke, Julian Leether Griffin(2018). Metabolomics and Lipidomics Study of Mouse Models of Type 1 Diabetes Highlights Divergent Metabolism in Purine and Tryptophan Metabolism Prior to Disease Onset . Journal of Proteome Research. 17. (3). p. 946--960. American Chemical Society ({ACS})
- Animesh Acharjee, Pierre-Yves Chibon, Bjorn Kloosterman, Twan America, Jenny Renaut, Chris Maliepaard, Richard G. F. Visser(2018). Genetical genomics of quality related traits in potato tubers using proteomics . BMC Plant Biology. 18. (1). Springer Nature
- Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi(2017). Network mining based elucidation of the dynamics of cross-market clustering and connectedness in Asian region: An MST and hierarchical clustering approach . Journal of King Saud University - Computer and Information Sciences. Elsevier {BV}
- Animesh Acharjee, Philippa Prentice, Carlo Acerini, James Smith, Ieuan A. Hughes, Ken Ong, Julian L. Griffin, David Dunger, Albert Koulman(2017). The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism . Metabolomics. 13. (3). Springer Nature
- Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi(2017). Investigating the Evolution of Linkage Dynamics among Equity Markets Using Network Models and Measures: The Case of Asian Equity Market Integration . Data. 2. (4). p. 41. {MDPI} {AG}
- Animesh Acharjee, Zsuzsanna Ament, James A. West, Elizabeth Stanley, Julian L. Griffin(2016). Integration of metabolomics, lipidomics and clinical data using a machine learning method . BMC Bioinformatics. 17. (S15). Springer Nature
- Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi, Wei-Xing Zhou(2016). Investigating the Influence Relationship Models for Stocks in Indian Equity Market: A Weighted Network Modelling Study . PLOS ONE. 11. (11). p. e0166087. Public Library of Science ({PLoS})
- Animesh Acharjee, Bjorn Kloosterman, Richard G. F. Visser, Chris Maliepaard(2016). Integration of multi-omics data for prediction of phenotypic traits using random forest . BMC Bioinformatics. 17. (S5). Springer Nature
- Animesh Acharjee(2012). Comparison of Regularized Regression Methods for ~Omics Data . Journal of Postgenomics Drug & Biomarker Development. 03. (03). {OMICS} Publishing Group
- Carreno-Quintero, N., Acharjee, A., Maliepaard, C., Bachem, C.W.B., Mumm, R., Bouwmeester, H., Visser, R.G.F., Keurentjes, J.J.B.(2012). Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality . Plant Physiology. 158. (3). p. 1306-1318.
- Animesh Acharjee, Bjorn Kloosterman, Ric C.H. de Vos, Jeroen S. Werij, Christian W.B. Bachem, Richard G.F. Visser, Chris Maliepaard(2011). Data integration and network reconstruction with ∼omics data using Random Forest regression in potato . Analytica Chimica Acta. 705. (1-2). p. 56--63. Elsevier {BV}
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BOOK CHAPTER
- (2020). Translational biomarkers in the era of precision medicine . Advances in Clinical Chemistry.
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OTHER
- Animesh Acharjee, Joseph Larkman, Victor Roth Cardoso, Georgios V. Gkoutos(2020). Effect of biomarker identification on power analysis for diagnostics research . Research Square
- Animesh Acharjee, Joseph Larkman, Victor Roth Cardoso, Georgios V. Gkoutos(2020). PowerTools: A web based user-friendly tool for future translational study design . Research Square
- Sedlackova L, Otten EG, Scialo F, Shapira D, Kataura T, Carroll B, Seranova E, Rabanal-Ruiz Y, Kelly G, Stefanatos R, et al.(2020). Autophagy promotes cell and organismal survival by maintaining NAD(H) pools .
- Pal N, Acharjee A, Ament Z, Dent T, Yavari A, Mahmod M, Ariga R, West J, Steeples V, Cassar M, et al.(2019). Metabolic Profiling of Aortic Stenosis and Hypertrophic Cardiomyopathy Identifies Mechanistic Contrasts in Substrate Utilisation .
- Liu K, Acharjee A, Hinz C, Liggi S, Murgia A, Denes J, Gulston MK, Wang X, Chu Y, West JA, et al.(2019). The consequences of lipid remodelling of adipocyte cell membranes being functionally distinct from global lipid storage during obesity .
- Animesh Acharjee, Argyris Zardilis, João Dias, James Smith(2014). Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism . Computational Methods in Systems Biology. p. 244--247. Springer International Publishing
- Animesh Acharjee, Argyris Zardilis, João Dias, James Smith(2014). Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism . Computational Methods in Systems Biology. p. 244--247. Springer International Publishing
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BOOK
- Zardilis, A., Dias, J., Acharjee, A., Smith, J.(2014). Extensible and executable stochastic models of fatty acid and lipid metabolism . Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8859. p. 244-247.
