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Hire Dr. Animesh Acharjee

USD 80 per hour

United Kingdom

Freelance Data Scientist I Biomarker Discovery and Statistical Bioinformatics | Expert in R

Summary

Dr. Animesh Acharjee is presently working as a senior scientist with the University of Birmingham, UK and visiting Scientist at the University of Cambridge, UK where he is leading a team involved in "data driven" knowledge discovery. He is also a visiting faculty with School of Management Studies (SOMS), NIT Calicut, India. Prior to joining the University of Cambridge, he was working as a Scientist in BASF, Belgium and Statistician in Synergie Lyon Cancer Centre, France. He did his B. Tech in Electrical Engineering from North Eastern Regional Institute of Science and Technology (NERIST) in Electrical Engineering. After finishing his post graduate in Bioinformatics from IBAB, Bangalore, India he was working with BrainWave Biosolutions Pvt Ltd as Computational Scientist and developed many data oriented solutions in the healthcare domain. He did his PhD from Wageningen University, The Netherlands on applied machine learning and data analysis. He has been granted several International fellowships during his career progression such as the International Society for Computational Biology (ISCB), British Council, Newton-Katip Çelebi Fund, Dutch Government. Further, he is an editor with the prestigious journal PLoS ONE and reviewer with multiple international journals such as Bioinformatics, BMC Bioinformatics, British Journal of Applied Science & Technology, International Journal of Agricultural Policy and Research. He published many articles in leading journals and presented his work more than 15 countries, including Massachusetts Institute of Technology (MIT), USA; Judge Business School, Cambridge, UK.

Subject Matter Expertise

Services

Literature search Deep dive into topic, Gap Analysis, Science-based recommendations

Scientific consulting Technical review of journal article, Journal Selection

Data Science Data visualization, Analytical report, Analysis from dataset, Machine learning, Quantitative analysis

Statistical review Verify statistical analysis, Conduct simple analysis, Conduct complex analyses

Writing Journal article, Scientific report, Grant proposal, Conference poster

Secondary Research Literature search

Clinical Research Consulting Perform statistical analysis

Work Experience

University of Birmingham

September 2017 - Present
Investigator Scientist

University of Cambridge

February 2014 - January 2017

Education

PhD

Wageningen University

July 2007 - June 2011

Publications

OTHER

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{"ProfilePublicationId":86580,"Type":"OTHER","Citation":"@incollection{Zardilis_2014,doi = {10.1007/978-3-319-12982-2_18},url = {https://doi.org/10.1007%2F978-3-319-12982-2_18},year = 2014,publisher = {Springer International Publishing},pages = {244--247},author = {Argyris Zardilis and Jo{\\~{a}}o Dias and Animesh Acharjee and James Smith},title = {Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism},booktitle = {Computational Methods in Systems Biology}}","JournalTitle":"Computational Methods in Systems Biology","Title":"Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism","CitationType":"BIBTEX","DOI":"10.1007/978-3-319-12982-2_18","Date":"2014-00-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Argyris Zardilis, Jo\u0026amp;#227;o Dias, James Smith","TotalNumberOfPublications":0}

JOURNAL_ARTICLE

{"ProfilePublicationId":86578,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee2012,title = {Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality},journal = {Plant Physiology},year = {2012},volume = {158},number = {3},pages = {1306-1318},author = {Carreno-Quintero, N. and Acharjee, A. and Maliepaard, C. and Bachem, C.W.B. and Mumm, R. and Bouwmeester, H. and Visser, R.G.F. and Keurentjes, J.J.B.}}","JournalTitle":"Plant Physiology","Title":"Untargeted metabolic quantitative trait loci analyses reveal a relationship between primary metabolism and potato tuber quality","CitationType":"BIBTEX","DOI":"10.1104/pp.111.188441","Date":"2012-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84857966782\u0026partnerID=MN8TOARS","PublicationContributors":null,"ContributorNames":"Carreno-Quintero, N., Acharjee, A., Maliepaard, C., Bachem, C.W.B., Mumm, R., Bouwmeester, H., Visser, R.G.F., Keurentjes, J.J.B.","TotalNumberOfPublications":0}
{"ProfilePublicationId":86579,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2012,doi = {10.4172/2153-0769.1000126},url = {https://doi.org/10.4172%2F2153-0769.1000126},year = 2012,publisher = {{OMICS} Publishing Group},volume = {03},number = {03},author = {Animesh Acharjee},title = {Comparison of Regularized Regression Methods for {\\textasciitilde}Omics Data},journal = {Journal of Postgenomics Drug {\\\u0026amp;} Biomarker Development}}","JournalTitle":"Journal of Postgenomics Drug \u0026amp; Biomarker Development","Title":"Comparison of Regularized Regression Methods for ~Omics Data","CitationType":"BIBTEX","DOI":"10.4172/2153-0769.1000126","Date":"2012-00-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee","TotalNumberOfPublications":0}
{"ProfilePublicationId":86574,"Type":"JOURNAL_ARTICLE","Citation":"@article{Bhattacharjee_2016,doi = {10.1371/journal.pone.0166087},url = {https://doi.org/10.1371%2Fjournal.pone.0166087},year = 2016,month = {nov},publisher = {Public Library of Science ({PLoS})},volume = {11},number = {11},pages = {e0166087},author = {Biplab Bhattacharjee and Muhammad Shafi and Animesh Acharjee},editor = {Wei-Xing Zhou},title = {Investigating the Influence Relationship Models for Stocks in Indian Equity Market: A Weighted Network Modelling Study},journal = {{PLOS} {ONE}}}","JournalTitle":"PLOS ONE","Title":"Investigating the Influence Relationship Models for Stocks in Indian Equity Market: A Weighted Network Modelling Study","CitationType":"BIBTEX","DOI":"10.1371/journal.pone.0166087","Date":"2016-11-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi, Wei-Xing Zhou","TotalNumberOfPublications":0}
{"ProfilePublicationId":86575,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2016,doi = {10.1186/s12859-016-1043-4},url = {https://doi.org/10.1186%2Fs12859-016-1043-4},year = 2016,month = {jun},publisher = {Springer Nature},volume = {17},number = {S5},author = {Animesh Acharjee and Bjorn Kloosterman and Richard G. F. Visser and Chris Maliepaard},title = {Integration of multi-omics data for prediction of phenotypic traits using random forest},journal = {{BMC} Bioinformatics}}","JournalTitle":"BMC Bioinformatics","Title":"Integration of multi-omics data for prediction of phenotypic traits using random forest","CitationType":"BIBTEX","DOI":"10.1186/s12859-016-1043-4","Date":"2016-06-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Bjorn Kloosterman, Richard G. F. Visser, Chris Maliepaard","TotalNumberOfPublications":0}
{"ProfilePublicationId":86576,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2011,doi = {10.1016/j.aca.2011.03.050},url = {https://doi.org/10.1016%2Fj.aca.2011.03.050},year = 2011,month = {oct},publisher = {Elsevier {BV}},volume = {705},number = {1-2},pages = {56--63},author = {Animesh Acharjee and Bjorn Kloosterman and Ric C.H. de Vos and Jeroen S. Werij and Christian W.B. Bachem and Richard G.F. Visser and Chris Maliepaard},title = {Data integration and network reconstruction with $\\sim$omics data using Random Forest regression in potato},journal = {Analytica Chimica Acta}}","JournalTitle":"Analytica Chimica Acta","Title":"Data integration and network reconstruction with ∼omics data using Random Forest regression in potato","CitationType":"BIBTEX","DOI":"10.1016/j.aca.2011.03.050","Date":"2011-10-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Bjorn Kloosterman, Ric C.H. de Vos, Jeroen S. Werij, Christian W.B. Bachem, Richard G.F. Visser, Chris Maliepaard","TotalNumberOfPublications":0}
{"ProfilePublicationId":86562,"Type":"JOURNAL_ARTICLE","Citation":"@article{Bhattacharjee_2017,doi = {10.3390/data2040041},url = {https://doi.org/10.3390%2Fdata2040041},year = 2017,month = {dec},publisher = {{MDPI} {AG}},volume = {2},number = {4},pages = {41},author = {Biplab Bhattacharjee and Muhammad Shafi and Animesh Acharjee},title = {Investigating the Evolution of Linkage Dynamics among Equity Markets Using Network Models and Measures: The Case of Asian Equity Market Integration},journal = {Data}}","JournalTitle":"Data","Title":"Investigating the Evolution of Linkage Dynamics among Equity Markets Using Network Models and Measures: The Case of Asian Equity Market Integration","CitationType":"BIBTEX","DOI":"10.3390/data2040041","Date":"2017-00-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi","TotalNumberOfPublications":0}
{"ProfilePublicationId":86563,"Type":"JOURNAL_ARTICLE","Citation":"@article{Bhattacharjee_2017,doi = {10.1016/j.jksuci.2017.11.002},url = {https://doi.org/10.1016%2Fj.jksuci.2017.11.002},year = 2017,month = {nov},publisher = {Elsevier {BV}},author = {Biplab Bhattacharjee and Muhammad Shafi and Animesh Acharjee},title = {Network mining based elucidation of the dynamics of cross-market clustering and connectedness in Asian region: An {MST} and hierarchical clustering approach},journal = {Journal of King Saud University - Computer and Information Sciences}}","JournalTitle":"Journal of King Saud University - Computer and Information Sciences","Title":"Network mining based elucidation of the dynamics of cross-market clustering and connectedness in Asian region: An MST and hierarchical clustering approach","CitationType":"BIBTEX","DOI":"10.1016/j.jksuci.2017.11.002","Date":"2017-11-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Biplab Bhattacharjee, Muhammad Shafi","TotalNumberOfPublications":0}
{"ProfilePublicationId":86564,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2017,doi = {10.1007/s11306-017-1166-2},url = {https://doi.org/10.1007%2Fs11306-017-1166-2},year = 2017,month = {jan},publisher = {Springer Nature},volume = {13},number = {3},author = {Animesh Acharjee and Philippa Prentice and Carlo Acerini and James Smith and Ieuan A. Hughes and Ken Ong and Julian L. Griffin and David Dunger and Albert Koulman},title = {The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism},journal = {Metabolomics}}","JournalTitle":"Metabolomics","Title":"The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism","CitationType":"BIBTEX","DOI":"10.1007/s11306-017-1166-2","Date":"2017-01-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Philippa Prentice, Carlo Acerini, James Smith, Ieuan A. Hughes, Ken Ong, Julian L. Griffin, David Dunger, Albert Koulman","TotalNumberOfPublications":0}
{"ProfilePublicationId":86565,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2018,doi = {10.1186/s12870-018-1229-1},url = {https://doi.org/10.1186%2Fs12870-018-1229-1},year = 2018,month = {jan},publisher = {Springer Nature},volume = {18},number = {1},author = {Animesh Acharjee and Pierre-Yves Chibon and Bjorn Kloosterman and Twan America and Jenny Renaut and Chris Maliepaard and Richard G. F. Visser},title = {Genetical genomics of quality related traits in potato tubers using proteomics},journal = {{BMC} Plant Biology}}","JournalTitle":"BMC Plant Biology","Title":"Genetical genomics of quality related traits in potato tubers using proteomics","CitationType":"BIBTEX","DOI":"10.1186/s12870-018-1229-1","Date":"2018-01-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Pierre-Yves Chibon, Bjorn Kloosterman, Twan America, Jenny Renaut, Chris Maliepaard, Richard G. F. Visser","TotalNumberOfPublications":0}
{"ProfilePublicationId":86566,"Type":"JOURNAL_ARTICLE","Citation":"@article{Murfitt_2018,doi = {10.1021/acs.jproteome.7b00489},url = {https://doi.org/10.1021%2Facs.jproteome.7b00489},year = 2018,month = {feb},publisher = {American Chemical Society ({ACS})},volume = {17},number = {3},pages = {946--960},author = {Steven A. Murfitt and Paola Zaccone and Xinzhu Wang and Animesh Acharjee and Yvonne Sawyer and Albert Koulman and Lee D. Roberts and Anne Cooke and Julian Leether Griffin},title = {Metabolomics and Lipidomics Study of Mouse Models of Type 1 Diabetes Highlights Divergent Metabolism in Purine and Tryptophan Metabolism Prior to Disease Onset},journal = {Journal of Proteome Research}}","JournalTitle":"Journal of Proteome Research","Title":"Metabolomics and Lipidomics Study of Mouse Models of Type 1 Diabetes Highlights Divergent Metabolism in Purine and Tryptophan Metabolism Prior to Disease Onset","CitationType":"BIBTEX","DOI":"10.1021/acs.jproteome.7b00489","Date":"2018-02-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Steven A. Murfitt, Paola Zaccone, Xinzhu Wang, Yvonne Sawyer, Albert Koulman, Lee D. Roberts, Anne Cooke, Julian Leether Griffin","TotalNumberOfPublications":0}
{"ProfilePublicationId":86567,"Type":"JOURNAL_ARTICLE","Citation":"@article{Mena_2018,\n\tdoi = {10.1007/s00394-018-1683-4},\n\turl = {https://doi.org/10.1007%2Fs00394-018-1683-4},\n\tyear = 2018,\n\tmonth = {apr},\n\tpublisher = {Springer Science and Business Media {LLC}},\n\tvolume = {58},\n\tnumber = {4},\n\tpages = {1529--1543},\n\tauthor = {Pedro Mena and Iziar A. Ludwig and Virginia B. Tomatis and Animesh Acharjee and Luca Calani and Alice Rosi and Furio Brighenti and Sumantra Ray and Julian L. Griffin and Les J. Bluck and Daniele Del Rio},\n\ttitle = {Inter-individual variability in the production of flavan-3-ol colonic metabolites: preliminary elucidation of urinary metabotypes},\n\tjournal = {European Journal of Nutrition}\n}","JournalTitle":"European Journal of Nutrition","Title":"Inter-individual variability in the production of flavan-3-ol colonic metabolites: preliminary elucidation of urinary metabotypes","CitationType":"BIBTEX","DOI":"10.1007/s00394-018-1683-4","Date":"2019-06-03","Url":"https://doi.org/10.1007/s00394-018-1683-4","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Pedro Mena, Iziar A. Ludwig, Virginia B. Tomatis, Luca Calani, Alice Rosi, Furio Brighenti, Sumantra Ray, Julian L. Griffin, Les J. Bluck, et al.","TotalNumberOfPublications":0}
{"ProfilePublicationId":86568,"Type":"JOURNAL_ARTICLE","Citation":"@article{Sanders_2018,doi = {10.1186/s13059-018-1439-8},url = {https://doi.org/10.1186%2Fs13059-018-1439-8},year = 2018,month = {jun},publisher = {Springer Nature},volume = {19},number = {1},author = {Francis W. B. Sanders and Animesh Acharjee and Celia Walker and Luke Marney and Lee D. Roberts and Fumiaki Imamura and Benjamin Jenkins and Jack Case and Sumantra Ray and Samuel Virtue and Antonio Vidal-Puig and Diana Kuh and Rebecca Hardy and Michael Allison and Nita Forouhi and Andrew J. Murray and Nick Wareham and Michele Vacca and Albert Koulman and Julian L. Griffin},title = {Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption},journal = {Genome Biology}}","JournalTitle":"Genome Biology","Title":"Hepatic steatosis risk is partly driven by increased de novo lipogenesis following carbohydrate consumption","CitationType":"BIBTEX","DOI":"10.1186/s13059-018-1439-8","Date":"2018-06-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Francis W. B. Sanders, Celia Walker, Luke Marney, Lee D. Roberts, Fumiaki Imamura, Benjamin Jenkins, Jack Case, Sumantra Ray, Samuel Virtue, et al.","TotalNumberOfPublications":0}
{"ProfilePublicationId":86569,"Type":"JOURNAL_ARTICLE","Citation":"@article{Segal_2019,doi = {10.1177/1756284818822250},url = {https://doi.org/10.1177%2F1756284818822250},year = 2019,month = {jan},publisher = {{SAGE} Publications},volume = {12},pages = {175628481882225},author = {Jonathan P. Segal and Benjamin H. Mullish and Mohammed Nabil Quraishi and Animesh Acharjee and Horace R. T. Williams and Tariq Iqbal and Ailsa L. Hart and Julian R. Marchesi},title = {The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease},journal = {Therapeutic Advances in Gastroenterology}}","JournalTitle":"Therapeutic Advances in Gastroenterology","Title":"The application of omics techniques to understand the role of the gut microbiota in inflammatory bowel disease","CitationType":"BIBTEX","DOI":"10.1177/1756284818822250","Date":"2019-01-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Jonathan P. Segal, Benjamin H. Mullish, Mohammed Nabil Quraishi, Horace R. T. Williams, Tariq Iqbal, Ailsa L. Hart, Julian R. Marchesi","TotalNumberOfPublications":0}
{"ProfilePublicationId":86570,"Type":"JOURNAL_ARTICLE","Citation":"@article{Irvine_2019,doi = {10.1161/str.50.suppl_1.tmp18},url = {https://doi.org/10.1161%2Fstr.50.suppl_1.tmp18},year = 2019,month = {feb},publisher = {Ovid Technologies (Wolters Kluwer Health)},volume = {50},number = {Suppl{\\_}1},author = {Hannah J Irvine and Animesh Acharjee and Zoe Wolcott and Zsuzsanna Ament and Holly Hinson and Bradley J Molyneaux and J Marc Simard and Kevin N Sheth and W Taylor Kimberly},title = {Abstract {TMP}18: Intravenous Glibenclamide Reduces Hypoxanthine, a Novel Predictor of Brain Edema Formation: An Exploratory Analysis of {GAMES}-{RP}},journal = {Stroke}}","JournalTitle":"Stroke","Title":"Abstract TMP18: Intravenous Glibenclamide Reduces Hypoxanthine, a Novel Predictor of Brain Edema Formation: An Exploratory Analysis of GAMES-RP","CitationType":"BIBTEX","DOI":"10.1161/str.50.suppl_1.tmp18","Date":"2019-02-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Hannah J Irvine, Zoe Wolcott, Zsuzsanna Ament, Holly Hinson, Bradley J Molyneaux, J Marc Simard, Kevin N Sheth, W Taylor Kimberly","TotalNumberOfPublications":0}
{"ProfilePublicationId":86571,"Type":"JOURNAL_ARTICLE","Citation":"","JournalTitle":"Journal of Translational Medicine","Title":"-Omics biomarker identification pipeline for translational medicine","CitationType":"","DOI":"10.1186/s12967-019-1912-5","Date":"2019-12-00","Url":"https://doi.org/10.1186/s12967-019-1912-5","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Laura Bravo-Merodio, John A. Williams, Georgios V. Gkoutos","TotalNumberOfPublications":0}
{"ProfilePublicationId":86572,"Type":"JOURNAL_ARTICLE","Citation":"@article{Acharjee_2016,doi = {10.1186/s12859-016-1292-2},url = {https://doi.org/10.1186%2Fs12859-016-1292-2},year = 2016,month = {nov},publisher = {Springer Nature},volume = {17},number = {S15},author = {Animesh Acharjee and Zsuzsanna Ament and James A. West and Elizabeth Stanley and Julian L. Griffin},title = {Integration of metabolomics, lipidomics and clinical data using a machine learning method},journal = {{BMC} Bioinformatics}}","JournalTitle":"BMC Bioinformatics","Title":"Integration of metabolomics, lipidomics and clinical data using a machine learning method","CitationType":"BIBTEX","DOI":"10.1186/s12859-016-1292-2","Date":"2016-11-00","Url":"","PublicationContributors":null,"ContributorNames":"Animesh Acharjee, Zsuzsanna Ament, James A. West, Elizabeth Stanley, Julian L. Griffin","TotalNumberOfPublications":0}

BOOK

{"ProfilePublicationId":86577,"Type":"BOOK","Citation":"@article{Acharjee2014,title = {Extensible and executable stochastic models of fatty acid and lipid metabolism},journal = {Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)},year = {2014},volume = {8859},pages = {244-247},author = {Zardilis, A. and Dias, J. and Acharjee, A. and Smith, J.}}","JournalTitle":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","Title":"Extensible and executable stochastic models of fatty acid and lipid metabolism","CitationType":"BIBTEX","DOI":"","Date":"2014-00-00","Url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84910151787\u0026partnerID=MN8TOARS","PublicationContributors":null,"ContributorNames":"Zardilis, A., Dias, J., Acharjee, A., Smith, J.","TotalNumberOfPublications":0}

Freelance Data Scientist I Biomarker Discovery and Statistical Bioinformatics | Expert in R

University of Birmingham

Investigator Scientist

University of Cambridge

PhD

Wageningen University